mepster

mepster's Stars

• ucscGenomeBrowser/kent

  UCSC Genome Browser source tree. Stable branch: "beta".

  Language:C21787

• spotty-cloud/spotty

  Training deep learning models on AWS and GCP instances

  Language:Python49243

• evolutionaryscale/esm

  Language:Python1.2k128

• Unity-Technologies/ml-agents

  The Unity Machine Learning Agents Toolkit (ML-Agents) is an open-source project that enables games and simulations to serve as environments for training intelligent agents using deep reinforcement learning and imitation learning.

  Language:C#17k4.1k

• berkalpay/latticeproteins

  2D lattice protein simulator

  Language:Python1

• harmslab/latticeproteins

  2d protein lattice model simulator in Python

  Language:Python27

• mepster/wensn

  Python library to read the Wensn WS1361 Sound Pressure Level Meter over USB (on the Raspberry Pi)

  Language:Python3213

• jordan2175/markdown-tools

  Language:JavaScript234

• kovidgoyal/calibre

  The official source code repository for the calibre ebook manager

  Language:Python19.4k2.3k

• noDRM/DeDRM_tools

  DeDRM tools for ebooks

  Language:Python7k314

• kundajelab/variant-scorer

  A framework to score and analyze variant effects genome-wide using ChromBPNet models

  Language:Python82

• sayboltm/TP3005P

  Automation of TP3005P power supply

  Language:Python62

• jerryji1993/DNABERT

  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  Language:Python575156

• linkedin/FastTreeSHAP

  Fast SHAP value computation for interpreting tree-based models

  Language:Python51231

• mepster/chrombpnet

  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

  Language:Jupyter Notebook1

• jmschrei/tfmodisco-lite

  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.

  Language:Python5615

• kundajelab/chrombpnet

  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

  Language:Jupyter Notebook11531

• jessevig/bertviz

  BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)

  Language:Python6.8k772

• openai/openai-cookbook

  Examples and guides for using the OpenAI API

  Language:MDX58.8k9.3k

• gersteinlab/entexBERT

  The DNABERT model for ENTEx

  Language:Python5

• facebookresearch/fairseq

  Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

  Language:Python30.2k6.4k

• google-research/bert

  TensorFlow code and pre-trained models for BERT

  Language:Python37.9k9.6k

• franbvalero/BERT-long-sentence-classification

  Using BERT for long sentence classification (more than 512 word pieces).

  Language:Python172

• calico/basenji

  Sequential regulatory activity predictions with deep convolutional neural networks.

  Language:Python395121

• davek44/Basset

  Convolutional neural network analysis for predicting DNA sequence activity.

  Language:Jupyter Notebook253107

• lucidrains/enformer-pytorch

  Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

  Language:Python41677

• EtoTen/radonreader

  Read current radon level from RadonEye RD200 - modified to support RD200 v2

  Language:Python246

• tylertreat/comcast

  Simulating shitty network connections so you can build better systems.

  Language:Go10.3k383

• jbloomlab/latticeproteins

  Implements lattice models of proteins, and allows their evolution

  Language:Python33

• FIRST-Tech-Challenge/fmltc

  FIRST Machine Learning Toolchain

  Language:Python3914