merlyescalona
Bioinformatics/CS. Assistant Project Scientist. Genomic and HTP Sequencing simulations. Genome assembler @ccgproject
Paleogenomics Lab @ UCSCSanta Cruz, CA
Pinned Repositories
chicago
cph-hummers-coverage-analysis
Coverage analysis of the data from the targeted-sequencing experiment of Hummingbirds (data from the paper Fonseca et al. 2018)
CUVI.iOS
Repositorio de los ejemplos realizador en el curso de iOS en la Universidad de Vigo
datasciencecoursera
Data Science Toolbox github repository
eseidojo-opencv-python
This is basic code to read, create and handle images and videos with Pyhton and OpenCV.
indelible-ngsphy
This is a fork of the original INDELible (Fletcher and Yang, 2009), a simulator of biological evolution. Now allowing the use of a sequence as ancestral.
me-bioinf-utilities
Random scripts to solve small bioinformatic-related problems
ngsphy
NGSphy: phylogenomic simulation of next-generation sequencing data
ucsc-eeb-intro2comptools
Workshop/seminar on basic programming skills for biologists / Introduction to computational tools
yagcloser
YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
merlyescalona's Repositories
merlyescalona/ngsphy
NGSphy: phylogenomic simulation of next-generation sequencing data
merlyescalona/yagcloser
YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
merlyescalona/ucsc-eeb-intro2comptools
Workshop/seminar on basic programming skills for biologists / Introduction to computational tools
merlyescalona/indelible-ngsphy
This is a fork of the original INDELible (Fletcher and Yang, 2009), a simulator of biological evolution. Now allowing the use of a sequence as ancestral.
merlyescalona/eseidojo-opencv-python
This is basic code to read, create and handle images and videos with Pyhton and OpenCV.
merlyescalona/me-bioinf-utilities
Random scripts to solve small bioinformatic-related problems
merlyescalona/chicago
merlyescalona/cph-hummers-coverage-analysis
Coverage analysis of the data from the targeted-sequencing experiment of Hummingbirds (data from the paper Fonseca et al. 2018)
merlyescalona/CUVI.iOS
Repositorio de los ejemplos realizador en el curso de iOS en la Universidad de Vigo
merlyescalona/datasciencecoursera
Data Science Toolbox github repository
merlyescalona/datasharing
The Leek group guide to data sharing
merlyescalona/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
merlyescalona/gacmsa
GACMSA: Get Allele counts from Multiple Sequence Alignment files
merlyescalona/mapping_pipeline
Mapping pipeline for data generated using Arima-HiC
merlyescalona/molluscs-paving
Simulations for the discovery of PAV
merlyescalona/Mutation-Simulator
Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations.
merlyescalona/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
merlyescalona/refselector
For simulations of targeted-sequencing experiments under a known species/gene tree distribution, extracts the reference sequences that be used for mapping.
merlyescalona/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
merlyescalona/simphycompress
Compresses SimPhy datasets into a single gzipped file for all the gene trees and gzipped mulitple sequence alignments for all the loci.
merlyescalona/simpred
SNV impact predictor
merlyescalona/tadtool
TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
merlyescalona/travis-ci-tests
Trying to omit constantly modifying the source repo to fix installation issues
merlyescalona/vc-benchmark-cesga
Variant callers benchmark using in silico targeted-sequencing datasets with pipeline optimized for SLURM @ CESGA, ES.
merlyescalona/web