Pinned Repositories
2d-particle-tracking
2D Crocker and Grier particle identification and tracking
atom2xyz
A python script for converting LAMMPS atom files to XYZ files
bks-silica
Simulations of BKS silica in LAMMPS
cell_list
A simple implementation of a cell list
creep-sheared-gels
A series of scripts for the preparation of LAMMPS simulations of sheard gels.
DDM
Differential Difference Microscopy for confocal images
experimental_rdf
Measurement of radial distribution function from experimental coordinates
IntroToPython
surface_fitting
Fit a surface to a serties of 3d points in space using interpolation.
zenodo-data-download
Zenodo data example
merrygoat's Repositories
merrygoat/bks-silica
Simulations of BKS silica in LAMMPS
merrygoat/creep-sheared-gels
A series of scripts for the preparation of LAMMPS simulations of sheard gels.
merrygoat/DDM
Differential Difference Microscopy for confocal images
merrygoat/2d-particle-tracking
2D Crocker and Grier particle identification and tracking
merrygoat/IntroToPython
merrygoat/surface_fitting
Fit a surface to a serties of 3d points in space using interpolation.
merrygoat/zenodo-data-download
Zenodo data example
merrygoat/atom2xyz
A python script for converting LAMMPS atom files to XYZ files
merrygoat/cell_list
A simple implementation of a cell list
merrygoat/experimental_rdf
Measurement of radial distribution function from experimental coordinates
merrygoat/fractal_dimension
Measure fractal dimension from raw image files
merrygoat/lattice_generator
Generate cubic and al2cu lattices in xyz and lammps data format
merrygoat/plane_fitting
Fitting a 2d plane to a 3d surface to assess local normal vector
merrygoat/amazon-account-manager
A Flask application for managing AWS account billing
merrygoat/audit-calendar
A web app for scheduling and logging events
merrygoat/aws_pc
Methods and objects for interfacing with AWS through boto3
merrygoat/chi4
Code to calculate chi 4 from particle trajectory data
merrygoat/chord_length
Calculation of Chord length in gels
merrygoat/clever_clustering
A python script to read in XYZ data and perform hierarchical aglomerative clustering
merrygoat/Dynamical-Variance-Analysis
Calculation of Chi4 directly from image data
merrygoat/fourier-crystal-detection
Detect crystalline order in image files by identifying peaks in Fourier transforms of the images
merrygoat/How-to-write-a-paper
A tutorial on structuring scientific writing
merrygoat/merrygoat.github.com
Github Pages for Merrygoat
merrygoat/papers_from_orcid
Scan public records of ORCIDs to return a list of recent publications
merrygoat/pi_pico_temperature
Code to interface with a Raspberry Pi Pico
merrygoat/tdstrack
Two Dimensional Slice tracking. Takes particle locations from multiple 2D slices of a z stack and uses them to locate particle positions in 3 dimensions
merrygoat/xyz_parser
A module for reading and writing XYZ files