All code and analyses used in my master's thesis: Development of animal, cellular, and molecular resources for the Drosophila innubila Nudivirus system
The qPCR_analysis directory holds all data and code analyzing and visualzing the qPCR experiments done for my thesis.
The Infection_suvival_curves directory includes the data and code for analyzing and visualizing infection experiments done in D. innubila flies
The PCR_analysis directory holds all data and code analyzing the PCR experiments for determining infection status of experimental flies
The Comparing_DiNV_in Dinn_vs_Dv1_cells includes the steps taken analyzing the whole genome sequencing data of DiNV from Dinn-1 cells and Dv-1 cells. This includes sequence QC, mapping, SNP calling, and SNP analyses.
The analyses_with_no_category directory includes a few individual analyses that did not fit into one of the above directories. These are the data and code for generating the fluid concentration graphs, the code for the D. innubia egg production graph, and the crRNA design tool.