Pinned Repositories
atlas
ATLAS - Three commands to start analyzing your metagenome data
Atlas2Anvio
Hand output of Atlas to Anvio
atlas_analyze
Scripts to get the most of the output of metagenome-atlas
clusterprofile
Snakemake profile for cluster submission of Atlas on almost any cluster system
genome-annotator
metagenome-assembly
Workflow module for metagenome assembly
snake_gtdbtk
A snakemake for GTDB-tk
Tutorial
A tutorial for Metagenome-Atlas
Tutorial_Finnland
Tutorial given in 2021
virome_atlas
atlas extension for phage discovery
metagenome-atlas's Repositories
metagenome-atlas/atlas
ATLAS - Three commands to start analyzing your metagenome data
metagenome-atlas/Tutorial
A tutorial for Metagenome-Atlas
metagenome-atlas/atlas_analyze
Scripts to get the most of the output of metagenome-atlas
metagenome-atlas/snake_gtdbtk
A snakemake for GTDB-tk
metagenome-atlas/Tutorial_Finnland
Tutorial given in 2021
metagenome-atlas/Atlas2Anvio
Hand output of Atlas to Anvio
metagenome-atlas/genome-annotator
metagenome-atlas/clusterprofile
Snakemake profile for cluster submission of Atlas on almost any cluster system
metagenome-atlas/metagenome-assembly
Workflow module for metagenome assembly
metagenome-atlas/virome_atlas
atlas extension for phage discovery
metagenome-atlas/genecatalog_atlas
Extended genecatalog workflow for metagenome-atlas
metagenome-atlas/genome_atlas
Snakefile pipeline for taxonomic and functional annotation of (Metagenome assembled) genome
metagenome-atlas/plasmid_atlas
metagenome-atlas/quantification_atlas
Workflow for quantifications
metagenome-atlas/snakemake-metagenome-workflows
A collection of snakemake-workflows for metagenomics that can be used as modules
metagenome-atlas/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
metagenome-atlas/supp_data_atlas
Supplementary data for Atlas manuscript
metagenome-atlas/BinderTutorial
This repo contains the environment needed for the Tutorial
metagenome-atlas/Demo
Demo of metagenome Atlas
metagenome-atlas/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
metagenome-atlas/Example
This is an example output of metagenome Atlas v2.4
metagenome-atlas/example_data
metagenome-atlas/function_atlas
metagenome-atlas/kingfisher_workflow
This is a workflow that allows you to download whole projects and metadata with kingfisher. Additionally, it takes care about merging same samples together.
metagenome-atlas/metagenome-atlas.github.io
Website
metagenome-atlas/old_atlas_webpage
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
metagenome-atlas/old_metagenome-atlas.github.io
Website
metagenome-atlas/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
metagenome-atlas/Tryitout
metagenome-atlas/virsearch
Snakemake workflow to detect and classify viruses in metagenome assemblies.