NextFlow workshop materials for LIBD Rstats club presentation.
Session #1 10min -- 5min -- show file tree, open processes 10min -- present channels, workflow 15min -- run workflow, talk about console outputs
Sean Maden, Nick Eagles, Hédia Tnani
The main workshop sessions are two sessions presented in December 2023 (12/1/23 and 12/8/23). The first session provides an introduction to NextFlow concepts. The second session provides more in depth discussion of NextFlow applications.
Main resources for learing about NextFlow and debugging issues.
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Main NextFlow documentation : Main documentation provided by the NextFlow team.
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Groovy (NextFlow scripting language) cheatsheet : Cheatsheet for Groovy, the syntax that NextFlow's scripting language is based on.
Resources for learning more about NextFlow, applying workflows, and learning domain usages.
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NextFlow training resources (training.nextflow.io) : Key training resources provided by the NextFlow team.
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NextFlow Course Fall 2023 (tutorial) : Course on showing NextFlow basics and how to use NextFlow.
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NextFlow Workshop 2022 (video playlist) : Extensive workshops exploring NextFlow basics and domain specific uses.
Applications of NextFlow for specific domains
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Using NextFlow and R (2023, presentation) : NextFlow fundamentals, with focus on bioinformatics and using R with workflows.
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Better benchmark workflows (2023, blog) : Blog about running benchmarks of R functions with NextFlow.
Available NextFlow pipelines
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nf-core(main website) : Key resource for example workflows and starting workflows, spanning many subject areas and domains. -
awesome-nextflow(GH repo) : Numerous example workflows across domains.