METASPACE
Scientific project on metabolite annotation of big data from imaging mass spectrometry
EMBL, Heidelberg, Germany
Pinned Repositories
coloc
Methods for measuring co-localization of ion images
Lithops-METASPACE
Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline
metadata
Metadata for imaging mass spectrometry
metaspace
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
metaspace-converter
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
offsample
Project to develop methods to recognize off-sample mass spectrometry images
sm-engine
Engine for metabolite annotation for imaging mass spectrometry
sm-engine-ansible
Setting up cloud infrastructure for the engine using Ansible
sm-webapp
Frontend of METASPACE web application
survey
Results of a community survey on imaging mass spectrometry in 2015
METASPACE's Repositories
metaspace2020/metaspace
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
metaspace2020/Lithops-METASPACE
Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline
metaspace2020/metaspace-converter
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
metaspace2020/coloc
Methods for measuring co-localization of ion images
metaspace2020/sm-engine
Engine for metabolite annotation for imaging mass spectrometry
metaspace2020/offsample
Project to develop methods to recognize off-sample mass spectrometry images
metaspace2020/sm-webapp
Frontend of METASPACE web application
metaspace2020/survey
Results of a community survey on imaging mass spectrometry in 2015
metaspace2020/sm-engine-ansible
Setting up cloud infrastructure for the engine using Ansible
metaspace2020/centroidize
helper webapp for SCiLS export to METASPACE
metaspace2020/ims-simulator
Simulation of HR imaging mass spectrometry data
metaspace2020/metadata
Metadata for imaging mass spectrometry
metaspace2020/metaspace-website
Main website of the METASPACE project
metaspace2020/data_serve
metaspace2020/parsedatabases
Tools for parsing public databases for inclusion in METASPACE
metaspace2020/pixel-annot-export
Metaspace pixel annotation export snapshots
metaspace2020/sm-analytics-python
Utilities for working with annotations
metaspace2020/sm-graphql
GraphQL server for communication between the frontend and the backend
metaspace2020/sm-models-server
Prototype for the evaluation server (not ready).
metaspace2020/sm-molecular-db
Unified REST API for molecular database data
metaspace2020/sm-standalone
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