Pinned Repositories
atac-seq-pipeline
ENCODE ATAC-seq pipeline
Awesome-Bio-Foundation-Models
A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
awesome-deep-learning-single-cell-papers
Awesome-Reproducible-Analysis-of-Single-Cell-Papers
A curated list of awesome reproducible papers in single-cell omics
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bollito
A single-cell RNA-seq pipeline
ChIPpipes
Pipelines for ChIP-seq / CUT&RUN / CUT&Tag etc. analysis
In-depth-NGS-Data-Analysis-Course
metaspine
Config files for my GitHub profile.
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
metaspine's Repositories
metaspine/SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
metaspine/atac-seq-pipeline
ENCODE ATAC-seq pipeline
metaspine/Awesome-Bio-Foundation-Models
A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
metaspine/awesome-deep-learning-single-cell-papers
metaspine/Awesome-Reproducible-Analysis-of-Single-Cell-Papers
A curated list of awesome reproducible papers in single-cell omics
metaspine/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
metaspine/metaspine
Config files for my GitHub profile.
metaspine/cluster_rnaseq
metaspine/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
metaspine/cols4all
Colors for all (R package)
metaspine/cutTag-pipeline
Pipeline for Cut&Tag analysis
metaspine/ecotyper
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
metaspine/Escort
metaspine/ilus-WES-WGS-
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
metaspine/infercna
Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
metaspine/ktplots
Some tools for plotting single-cell data
metaspine/mamba
The Fast Cross-Platform Package Manager
metaspine/metaspine.github.io
metaspine/Pipelines-Wrappers
Shell wrappers for common NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
metaspine/ProcessTrialtrove
Software for analyzing the data in the trialtrove database
metaspine/Public-code-repository
metaspine/Reproductions-of-public-code
Testing and organization of public code
metaspine/scanorama
Panoramic stitching of single cell data
metaspine/scFEA
single cell Flux Estimation Analysis (scFEA) Try the below web server!
metaspine/scMultiome_analysis_vignette
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
metaspine/scRNAseq_analysis_vignette
Tutorial for scRNA-seq data analysis beginners using R
metaspine/single-cell-Databases
metaspine/single-cell-papers-with-code
Papers with code for single cell related papers
metaspine/weekly
生信爱好者周刊（每周日发布）
metaspine/workflowr
Organize your project into a research website