meyer-lab/gc-valent

Manuscript two plan

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Here's a tentative plan for the next manuscript:

  • Figure 1: Receptor variation drives response heterogeneity
    • Brian's M&M plots showing dose-response profile for differing levels of receptor
    • Single cell PCA plots at a few doses
  • Figure 2: Quantifying receptor variability
    • Mean, var, skew of receptors in each cell population
    • The error of each of these estimates will need to be calculated using the replicates
  • Figure 3: Quantifying response
    • Mean, var, skew of each population pSTAT5
    • Maybe the wt IL-2/15 in the main figure, with muteins in the supplement
  • Figure 4: Moment propagation
    • A cartoon of the approach
    • Fitting to the data and fit parameters
    • Data/fit overlay
  • Figure 5: Showing that fitting the higher moments improves the fit
    • Infers the covariance of the receptors?
    • Overall better model fit?
  • Figure 6: Exploration/validation
    • Left open for now.

Let's discuss this, then we can break it up into parts.

This moves the receptor variability up front. A sketch of a Fig. 1 and S1:

fig-outline