Pinned Repositories
AMMS2022
This repository holds all of the code for the Applied Malaria Molecular Surveillance (AMMS) 2022 workshop, held at the EPHI in Addis Ababa, 5-7 August 2022.
bunchofscripts
coalestr-python
coiaf
Complexity of Infection Estimation with Allele Frequencies
ColombianBarcode_transmission
Repo to use for my transmission analysis
dcifer
Distance for Complex Infections: Fast Estimation of Relatedness (R package)
Deepsweep
Using deep learning to identify recent positive selection in malaria parasite sequence data
gambian_barcodes_analysis
Transmission analysis using 101 SNPs barcode data. This analysis aims to use SNPs barcode data and 1591 isolates to explore Plasmodium falciparum drug resistance profile in the Gambia.
Genetic_Diversity_Anopheles_Gambiae
Population Genetic Analysis on Anopheles Gambiae
magenta
Malaria Genomic Transmission Model
mfdiop's Repositories
mfdiop/AMMS2022
This repository holds all of the code for the Applied Malaria Molecular Surveillance (AMMS) 2022 workshop, held at the EPHI in Addis Ababa, 5-7 August 2022.
mfdiop/bunchofscripts
mfdiop/coalestr-python
mfdiop/coiaf
Complexity of Infection Estimation with Allele Frequencies
mfdiop/ColombianBarcode_transmission
Repo to use for my transmission analysis
mfdiop/dcifer
Distance for Complex Infections: Fast Estimation of Relatedness (R package)
mfdiop/Deepsweep
Using deep learning to identify recent positive selection in malaria parasite sequence data
mfdiop/gambian_barcodes_analysis
Transmission analysis using 101 SNPs barcode data. This analysis aims to use SNPs barcode data and 1591 isolates to explore Plasmodium falciparum drug resistance profile in the Gambia.
mfdiop/Genetic_Diversity_Anopheles_Gambiae
Population Genetic Analysis on Anopheles Gambiae
mfdiop/magenta
Malaria Genomic Transmission Model
mfdiop/mfdiop
mfdiop/nickbrazeau.github.io
My personal website: www.nicholasbrazeau.com
mfdiop/SeekDeep
Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab
mfdiop/selection_analysis_GMB1966
mfdiop/simuG
simuG: a general-purpose genome simulator
mfdiop/Trachoma_transmission
mfdiop/vcf2msa
convert a multi-sample VCF file to a multiple sequence alignment (C)
mfdiop/vcfdo
Some tools for processing and annotating VCF files, with focus on Plasmodium spp