/cnds_tools

general tools for UPenn CNDS group

Primary LanguageShell

CNDS utilities and scripts

heuristics

  • ZAPR01_baseline_heuristic.py used with fw-heudiconv to convert scan sequences to BIDS specifications for aslprep and fmriprep

study-specific

  • RF1 NCT, single subject behavior plots

pipeline

  • Singularity heudiconv-fmriprep-XCP
  • rsMRI fc targets

utilities:

  • ANTsct-status utility
  • new study organization and computing study summary reports
  • fcmap averaging and transforms