/long-winded-scripts

This is a collection of scripts that took me a large amount of time to put together.

Primary LanguageJupyter Notebook

Long-winded Scripts

This is a collection of scripts that took me a large amount of time to put together in R and python. I also am adding scripts to share with others.
- Occurrence Data (R).
- SoilGridDownload (python3).
- Convex Hulls (R).
- iDigBio Search Bar (R).

Occurrence Data

I really wanted to download data from 'idigbio', 'gbif', and 'bison' and keep specific columns - therefore I put together these scripts to help me do just that. See the OccurrenceData folder to see more. - NOTE: A talented undergraduate has updated this script and will be publishing a package called gators: georgraphic and taxonomic occurrence record scrubbing - stay tune for the citation. If you plan to publish updated code for the same purpose, cite this repository which will be updated with a link to hers when it becomes avaliable.

Column Description
name scientific name, http://rs.tdwg.org/dwc/terms/scientificName
basis basis of record, http://rs.tdwg.org/dwc/terms/basisOfRecord
date event data, http://rs.tdwg.org/dwc/terms/eventDate
institutionID institution ID, http://rs.tdwg.org/dwc/terms/institutionID
collectionCode collection code, http://rs.tdwg.org/dwc/terms/collectionCode
collectionID collection ID, http://rs.tdwg.org/dwc/terms/collectionID
country country, http://rs.tdwg.org/dwc/terms/country
county county, http://rs.tdwg.org/dwc/terms/county
state stateprovince, http://rs.tdwg.org/dwc/terms/stateProvince
locality http://rs.tdwg.org/dwc/terms/locality or http://rs.tdwg.org/dwc/terms/verbatimLocality
Latitude http://rs.tdwg.org/dwc/terms/decimalLatitude
Longitude http://rs.tdwg.org/dwc/terms/decimalLongitude
ID idigbio = uuid, gbif = key, bison = occurrenceID
coordinateUncertaintyInMeters http://rs.tdwg.org/dwc/terms/coordinateUncertaintyInMeters
habitat http://rs.tdwg.org/dwc/iri/habitat
prov indicates who provided the data: gbif, bison, or idigbio

Soil Grid Download

Downloading Soil Grids v2.0 for North America using python3 (in Juypter Notebook). Lots of help from Mike Belitz (Github: Mbelitz) on this one!

Convex Hulls

This script shows how to take occurrence records, create a convex hull, and add two different types of buffers.