mgi-qc

Pinned Repositories

• production_pipeline_tracker

  Interface to track/communicate sample tracking through the production pipeline

  Language:Python00

• WGBS_report

  generates wgbs report for given woid(s)

  Language:Python00

• stat_builder

  Searches for results files in work order directories and copies the rows to a sheet with all work orders

  Language:Python00

• ss_dt_auto

  update DT Smartsheet after MDS QC

  Language:Python00

• smartsheet_dt

  Smartsheet module for DT automation

  Language:Python00

• smartqc

  combine jira and gms workorder information

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• rna_report

  create rna QC report from cwl rna pipeline metrics files.

  Language:Python00

• Refalign-QC

  QC WGS - refalign and some somatic validation

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• qc_ccdg_smartsheet

  Patching script to upload ccdg QC complete files and information to Smartsheet.

  Language:Python00

• qcmail

  Auto send QC reports

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mgi-qc's Repositories