mgiulini
PhD in Computational biophysics, fascinated by the challenges of structural biology
Utrecht UniversityUtrecht, The Netherlands
mgiulini's Stars
LBM-EPFL/CARBonAra
Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protein entities.
i-VRESSE/haddock3-webapp
Web app which is front-end for bartender and wraps workflow builder with haddock3 catalog
bjing2016/alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
jproney/AF2Rank
dauparas/LigandMPNN
X-lab-3D/GradPose
HeliXonProtein/OmegaFold
OmegaFold Release Code
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
rvhonorato/alphafold-hpc-wrapper
AlphaFold-wrapper for small HPC
HWaymentSteele/AF_Cluster
Predict multiple protein conformations using sequence clustering and AlphaFold2.
ketatam/DiffDock-PP
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
oxpig/ImmuneBuilder
Predict the structure of immune receptor proteins
haddocking/arctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
DeepRank/Deeprank-GNN
Graph Network for protein-protein interface
PDB-REDO/dssp
Application to assign secondary structure to proteins
KosinskiLab/AlphaPulldown
piercelab/antibody_benchmark
Antibody-Antigen Docking and Affinity Benchmark
aqlaboratory/proteinnet
Standardized data set for machine learning of protein structure
haddocking/pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
potestiolab/canvas
Coarse-grained anisotropic network model for variable resolution simulations
potestiolab/excogito
Extensible coarse-graining tool
haddocking/haddock3
Official repo of the modular BioExcel version of HADDOCK
sissa-data-science/DADApy
Distance-based Analysis of DAta-manifolds in python