mgoonah

mgoonah's Stars

• TheMulQuaBio/TMQB

  The interactive, online Multilingual Quantitative Biologist

  Language:Jupyter Notebook3780

• mpievolbio-scicomp/cancer_sim

  CancerSim: A python3 package for stochastic cancer simulation in 2D.

  Language:Python74

• ml-tooling/best-of-jupyter

  🏆 A ranked list of awesome Jupyter Notebook, Hub and Lab projects (extensions, kernels, tools). Updated weekly.

  93778

• jupyter-xeus/xeus

  Implementation of the Jupyter kernel protocol in C++

  Language:C++90383

• KiraPugh/DDR_inhibitor_resistance

  Language:C++1

• Teichlab/cell2tcr

  Inference of TCR motifs

  Language:Jupyter Notebook263

• ravignir/5Hex-Tileset

  A MASSIVE tileset mod by Ravignir. New tile graphics, new unit graphics. Compatible with: RekMOD, Ancient and Medieval civs mods. Leave a star on the mod page if you like it.

  13416

• cytoflow/cytoflow

  A Python toolbox for quantitative, reproducible flow cytometry analysis

  Language:Python17149

• google-deepmind/alphageometry

  Language:Python4.1k464

• dair-ai/ML-YouTube-Courses

  📺 Discover the latest machine learning / AI courses on YouTube.

  16k1.9k

• whitews/FlowKit

  A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

  Language:Python15739

• dswang2011/DocLLM

  DocLLM: A layout-aware generative language model for multimodal document understanding

  1125

• MICS-Lab/scyan

  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.

  Language:Python331

• lisaweijler/FATE

  Official Pytorch implementation of FATE: Feature-Agnostic Transformer-based Encoder for learning generalized embedding spaces in flow cytometry data accepted at WACV 2024

  Language:Python5

• luglilab/Cytophenograph

  Pipeline for flow cytometry anlaysis

  Language:Python51

• TranslationalBioinformaticsUnit/LIBRA

  Machine Translation between paired Single Cell Multi Omics Data

  Language:HTML64

• francescojm/CRISPRcleanR

  Unsupervised correction of gene independent cell responses to CRISPR-cas9

  Language:R4713

• BruceMacD/chatd

  Chat with your documents using local AI

  Language:JavaScript91062

• redotvideo/mamba-chat

  Mamba-Chat: A chat LLM based on the state-space model architecture 🐍

  Language:Python90670

• yueliu1999/Awesome-Deep-Graph-Clustering

  Awesome Deep Graph Clustering is a collection of SOTA, novel deep graph clustering methods (papers, codes, and datasets).

  Language:Python829144

• langroid/langroid

  Harness LLMs with Multi-Agent Programming

  Language:Python2.6k241

• LewisLabUCSD/PinAPL-Py

  A no hassle tool for analyzing your favorite CRISPR screen dataset!

  Language:Python1110

• boutroslab/CRISPRAnalyzeR

  CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens

  Language:HTML8031

• horovod/horovod

  Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet.

  Language:Python14.2k2.2k

• jupyterlab/jupyter-ai

  A generative AI extension for JupyterLab

  Language:Python3.2k324

• jupyterhub/repo2docker

  Turn repositories into Jupyter-enabled Docker images

  Language:Python1.6k362

• chenlabgccri/Prep4DeepDEP

  R package to prepare data for DeepDEP

  Language:R87

• scverse/rapids_singlecell

  Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

  Language:Python14621

• Intron7/rapids_singlecell

  Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

  Language:Python3

• jupyterlab-contrib/rise

  RISE: "Live" Reveal.js JupyterLab Slideshow Extension

  Language:TypeScript18518