mgoonah

mgoonah's Stars

• All-Hands-AI/OpenHands

  🙌 OpenHands: Code Less, Make More

  Language:Python30.8k3.5k

• TabbyML/tabby

  Self-hosted AI coding assistant

  Language:Rust20.8k943

• TrafficGuard/nous

  TypeScript AI agent platform with Autonomous agents, Software developer agents, AI code review agents and more

  Language:TypeScript74232

• emcf/thepipe

  Extract markdown and images from PDFs, URLs, docs, slides, and more, ready for multimodal LLMs. ⚡

  Language:Python92167

• elyra-ai/elyra

  Elyra extends JupyterLab with an AI centric approach.

  Language:Python1.8k343

• jupyter-server/jupyter_server

  The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications.

  Language:Python479291

• sickcodes/Docker-OSX

  Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.

  Language:Shell40.5k1.9k

• CelVoxes/ceLLama

  Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports

  Language:R1325

• arunsupe/semantic-grep

  grep for words with similar meaning to the query

  Language:Go1.1k24

• epang-ucas/Cell-Graph-Compass

  Code repository for Cell-Graph Compass: Modeling Single Cells with Graph Structures Foundation Models

  Language:Python3

• lulab/Pathformer

  Pathformer: biological pathway informed transformer model

  Language:Python235

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k594

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k346

• PYangLab/scDeepFeatures

  Deep learning-based feature selection for single-cell omics data

  Language:Jupyter Notebook81

• iot-salzburg/gpu-jupyter

  GPU-Jupyter: Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.

  Language:Jupyter Notebook690231

• marimo-team/marimo

  A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

  Language:Python5.9k192

• carlini/yet-another-applied-llm-benchmark

  A benchmark to evaluate language models on questions I've previously asked them to solve.

  Language:Python84962

• quinlan-lab/applied-computational-genomics

  Applied Computational Genomics Course at UU: Spring 2020

  Language:HTML935205

• biodatascience/compbio_src

  Introduction to Computational Biology - source Rmarkdown files

  Language:R4935

• applied-bioinformatics/iab2

  An Introduction to Applied Bioinformatics, 2nd Edition

  Language:TeX12115

• jupyter4edu/jupyter-edu-book

  Teaching and Learning with Jupyter

  Language:TeX432130

• NVIDIA/warp

  A Python framework for high performance GPU simulation and graphics

  Language:Python4k223

• rejniaklab/LinG3D

  Lineage Graphs in 3D

  Language:Jupyter Notebook21

• mhasoba/TheMulQuaBio

  The interactive, online Multilingual Quantitative Biologist

  Language:Jupyter Notebook3581

• mpievolbio-scicomp/cancer_sim

  CancerSim: A python3 package for stochastic cancer simulation in 2D.

  Language:Python64

• ml-tooling/best-of-jupyter

  🏆 A ranked list of awesome Jupyter Notebook, Hub and Lab projects (extensions, kernels, tools). Updated weekly.

  91478

• jupyter-xeus/xeus

  Implementation of the Jupyter kernel protocol in C++

  Language:C++89484

• KiraPugh/DDR_inhibitor_resistance

  Language:C++1

• Teichlab/cell2tcr

  Inference of TCR motifs

  Language:Jupyter Notebook253

• ravignir/5Hex-Tileset

  A MASSIVE tileset mod by Ravignir. New tile graphics, new unit graphics. Compatible with: RekMOD, Ancient and Medieval civs mods. Leave a star on the mod page if you like it.

  12616