mgtools

Pinned Repositories

CRISPRone
Language:Perl3 2 02
DCTdomain
protein domain-level embedding via DCT for similarity search
Language:Python8 1 01
GutNet
Language:R3 2 10
HAPiID
HAPiID (pronunciation: Happy ID). High Abundance Protein guided Metaproteomics identification
Language:Python2 6 30
MetaProD
Language:CSS2 2 01
MicroKPNN
knowledge-primed neural network for microbiome-based predictions
Language:Python4 2 00
MinPath
MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.
Language:C20 1 89
myRT
Language:C6 2 21
PEbA
Protein Embedding based Alignment
Language:Python5 1 01
PhyloMint
Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
Language:C12 2 44

mgtools's Repositories

mgtools/MinPath
MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.
Language:C20 1 89
mgtools/PhyloMint
Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
Language:C12 2 44
mgtools/DCTdomain
protein domain-level embedding via DCT for similarity search
Language:Python8 1 01
mgtools/myRT
Language:C6 2 21
mgtools/PEbA
Protein Embedding based Alignment
Language:Python5 1 01
mgtools/MicroKPNN
knowledge-primed neural network for microbiome-based predictions
Language:Python4 2 00
mgtools/CRISPRone
Language:Perl3 2 02
mgtools/GutNet
Language:R3 2 10
mgtools/HAPiID
HAPiID (pronunciation: Happy ID). High Abundance Protein guided Metaproteomics identification
Language:Python2 6 30
mgtools/MetaProD
Language:CSS2 2 01
mgtools/crisprlong
tools for characterizing crispr arrays using long reads
Language:Python1 1 01
mgtools/guttree
Language:Python1 2 00
mgtools/MicroKPNN-MT
Multi-task microbiome-based knowledge-primed neural network
Language:Python1 2 0
mgtools/BacMGEnet
Inference of bacteria-phage interactions using CRISPR
Language:HTML0 2 00
mgtools/kmerLSHSA
Language:C++0 3 00
mgtools/AbundantOTU
Language:C++1 0
mgtools/CRISPRMisc
Language:Jupyter Notebook2 0
mgtools/GutMP
Language:Python3 0
mgtools/lele
Language:Jupyter Notebook1 0
mgtools/MetaProD-CRC
repository of proteins identified from proteomic datasets associated with colorectal cancer (CRC)
1 0
mgtools/MetaProD-ML
Language:Jupyter Notebook
mgtools/MicrobiomeCF
Language:Jupyter Notebook
mgtools/PPGpep
A software for creating pangenome graph for human genomes to improve peptide and protein identification from proteomic MS/MS data
Language:Python