Pinned Repositories
apple-health-extractor
This library provides functionality to parse and extract data from the XML exports of Apple Health app, enabling users to analyze and utilize their health data conveniently.
atlantis-example
A simple terraform project to use along with atlantis bootstrap mode
client-py
Python SMART on FHIR client
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
cookiecutter-pypackage
Cookiecutter template for a Python package.
cookiecutter-reproducible-data-science
Dancer-Plugin-Swagger
docker-ars
Docker container for the ARS service.
GFE
Repository for the GFE Ecosystem
pipeline
Consensus assembly and allele interpretation pipeline.
mhalagan's Repositories
mhalagan/apple-health-extractor
This library provides functionality to parse and extract data from the XML exports of Apple Health app, enabling users to analyze and utilize their health data conveniently.
mhalagan/atlantis-example
A simple terraform project to use along with atlantis bootstrap mode
mhalagan/client-py
Python SMART on FHIR client
mhalagan/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
mhalagan/cookiecutter-pypackage
Cookiecutter template for a Python package.
mhalagan/cookiecutter-reproducible-data-science
mhalagan/flow-GFE
Run fasta files through GFE with nextflow
mhalagan/flow-OptiType
Use nextflow to run BAM files through OptiType
mhalagan/ForestMHC
Predictor of MHC-I binding
mhalagan/gatsby-auth-starter-aws-amplify
Starter Project with Authentication with Gatsby & AWS Amplify
mhalagan/gfe-db
Graph database representing IPD-IMGT/HLA sequence data as GFE
mhalagan/gfe_client
Python client for working with the ACT service
mhalagan/gfefhir
Python package for creating FHIR resources with GFE
mhalagan/grimm
GRIMM: Graph IMputation and Matching for HLA Genotypes
mhalagan/HLA
mhalagan/hook
The longshoreman's hook was historically used by longshoremen (stevedores).
mhalagan/imgt_biosqldb
The IMGT/HLA sequence database persisted in a mysql BioSQL DB
mhalagan/jenkins-python-test
Project to test python app CI/CD with Jenkins
mhalagan/mhcpop
Population genetics scripts for the MHC
mhalagan/netMHC-spark
netMHC Apache Spark CLI
mhalagan/pelias
Pelias is a modular open-source geocoder using Elasticsearch.
mhalagan/pyARD
HLA ARS reduction in python
mhalagan/pyGFE
Python package for creating GFE notation from annotated sequences
mhalagan/pyHML
Code for working with HML data in python
mhalagan/redis-simple-cache
Simple redis based cache for storing results of python function calls, json encoded strings or html.
mhalagan/SeqAnn
Python package for doing fast and accurate sequence annotation
mhalagan/service-act
Allele Calling Tool (ACT)
mhalagan/service-ard
mhalagan/service-gfe-submission
Service for getting a GFE from raw sequence data.
mhalagan/service-haplotype-frequency-curation
Service used for curation of Haplotype Frequency