mhalushka/miRge3.0

Issues

• I can't get the same total counts using the GFF.

  #44 opened 2 years ago
  0

• cutadapt not found!. Required: cutadapt >=2.6

  #43 opened a year ago
  1

• Is my code working

  #42 opened 2 years ago
  1

• how to use -dex DESeq2 analysis

  #41 opened 2 years ago
  1

• code to train SVM from miRge2.0 paper

  #40 opened 2 years ago
  7

• miRge3_visualization.html empty

  #39 opened 3 years ago
  4

• Novel miRNAs error

  #38 opened 3 years ago
  4

• RNAfold error

  #37 opened 2 years ago
  4

• Start analysis from collapsed reads

  #36 opened 2 years ago
  2

• Strand assignment in bam output files

  #35 opened 2 years ago
  3

• maximum sample number to run and etc.

  #34 opened 2 years ago
  9

• Error while trying to do differential expression

  #33 opened 3 years ago
  2

• error

  #32 opened 2 years ago
  3

• Bowtie not found (After Conda installation)

  #31 opened 2 years ago
  9

• Different "miRge3.0 --help"

  #30 opened 3 years ago
  6

• Which file to use for deseq to analyse tRF differential expression?

  #29 opened 3 years ago
  5

• UMI output files

  #28 opened 3 years ago
  1

• using spike-in funcitonality

  #27 opened 3 years ago
  3

• Predicting novel miRNAs error

  #26 opened 3 years ago
  4

• error: samtools command not found, AttributeError: 'list' object has no attribute 'matches'

  #25 opened 3 years ago
  0

• Installation conflict

  #24 opened 3 years ago
  12

• question regarding crThreshold

  #23 opened 3 years ago
  2

• Mapped.csv miR does not equel to miR.Counts.csv

  #22 opened 3 years ago
  2

• Cutadapt error for GUI on mac

  #21 opened 3 years ago
  13

• adaptor trimming

  #20 opened 3 years ago
  9

• subprocess.CalledProcessError on docker miRge3.0

  #19 opened 3 years ago
  0

• The following module(s) are unknown: "bowtie"

  #18 opened 3 years ago
  13

• Questions

  #17 opened 3 years ago
  2

• Problem with bam file output

  #16 opened 2 years ago
  7

• Bowtie error

  #13 opened a year ago
  15

• Installing miRge3.0 on Windows - Error: "Failed building wheel for isal"

  #12 opened 3 years ago
  2

• ValueError: `bins` must be positive, when an integer

  #11 opened 3 years ago
  2

• quick question and reading into memory

  #10 opened 3 years ago
  1

• error

  #9 opened 3 years ago
  4

• bowtie -x index option failure

  #8 opened 3 years ago
  6

• How to input paired-end sequencing data？

  #7 opened 4 years ago
  5

• Sample data running error.

  #6 opened 4 years ago
  1