This script calculates the coupling fraction from raw read counts
Author: Mudra Hegde
Email: mhegde@broadinstitute.org
Version: 1.0
Required packages
- pandas
Inputs
Input File: .txt file with raw read counts for all possible combinations
Reference File: .csv reference file with all possible construct combinations in the first column; no header. Reference files for our experiments included in this folder
Output File
To run this script, type the following on the terminal:
python calc_couplingfraction_v1.0.py --input-file <Path to inputfile> --ref <Path to reference file> --outputfile <.txt output file name>