michaeltconnelly
National Human Genome Research Institute Coral holobiont evolution, host-microbe interactions, immunology and stress responses
National Human Genome Research InstituteBethedsa, MD
Pinned Repositories
academic-kickstart
coral_antibiotics_physiology
These scripts and data are for the analysis of physiology (IPAM fluorometry and respirometry), transcriptome and microbiome data for the publication "Antibiotics reduce Pocillopora coral-associated bacteria diversity, decrease holobiont oxygen consumption, and activate immune gene expression".
coral_immunogenomics
Scripts for phylogenetic analysis of coral immune gene families
coral_purves_test
EAPSI_Pocillopora_AxH
Scripts for analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in antibiotics, heat stress, combined, and control treatments
EAPSI_Pocillopora_LPS
Scripts and data for RNAseq analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in LPS and control treatments
EAPSI_Symbiodinaceae
Scripts for analysis Symbiodinaceae RNAseq
hello-world
hello_world
This is a test repo.
MetaPocillopora
Links to data and analysis scripts for the poster "Towards a modern integrative taxonomy of Pocillopora corals: a literature synthesis and meta-analysis of genetic data" (#3964) at Ocean Sciences Meeting 2022.
michaeltconnelly's Repositories
michaeltconnelly/EAPSI_Pocillopora_AxH
Scripts for analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in antibiotics, heat stress, combined, and control treatments
michaeltconnelly/EAPSI_Pocillopora_LPS
Scripts and data for RNAseq analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in LPS and control treatments
michaeltconnelly/academic-kickstart
michaeltconnelly/coral_antibiotics_physiology
These scripts and data are for the analysis of physiology (IPAM fluorometry and respirometry), transcriptome and microbiome data for the publication "Antibiotics reduce Pocillopora coral-associated bacteria diversity, decrease holobiont oxygen consumption, and activate immune gene expression".
michaeltconnelly/coral_immunogenomics
Scripts for phylogenetic analysis of coral immune gene families
michaeltconnelly/coral_purves_test
michaeltconnelly/EAPSI_Symbiodinaceae
Scripts for analysis Symbiodinaceae RNAseq
michaeltconnelly/hello-world
michaeltconnelly/hello_world
This is a test repo.
michaeltconnelly/MetaPocillopora
Links to data and analysis scripts for the poster "Towards a modern integrative taxonomy of Pocillopora corals: a literature synthesis and meta-analysis of genetic data" (#3964) at Ocean Sciences Meeting 2022.
michaeltconnelly/michaeltconnelly.github.io
Personal webpage for Mike Connelly
michaeltconnelly/iz-dry-corals
Repository for exploratory analysis of NMNH IZ dept. coral collections
michaeltconnelly/michaeltconnelly
Config files for my GitHub profile.
michaeltconnelly/PAN-10_qiime2
Analysis of the bacteria microbiome on PAN-10, the Pocillopora genotype used to assemble the genome
michaeltconnelly/pdam-genome
michaeltconnelly/pocillopora_hDNA_uces
Data and scripts for analysis of dry coral hDNA extractions and UCE sequencing
michaeltconnelly/pocillopora_mtorf_tips
michaeltconnelly/PopGen
Scripts for CompBio-athon PopGen instructional sessions: SNP analyses, Population Differentiation analyses, Outlier analyses & GWAS, eQTL analyses
michaeltconnelly/RaisingCoral_CoralGeneticsWorkshop_2022
michaeltconnelly/taiwan_p-acuta
Scripts for analysis of Taiwan Pocillopora coral mitochondrial lineages and algal symbiont communities
michaeltconnelly/tidy
Scripts and outputs from #TidyTuesday exercises