Pinned Repositories
dissertation
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
gambit
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
pa_nutrient
Analysis of whole genome sequencing data for Pseudomonas aeruginosa populations propagated in cystic fibrosis nutrients with and without biofilm selection
prophage
Analysis of read depth in evolved populations and clones of P. aeruginosa with prophage activation
public_health_bacterial_genomics
public_health_bioinformatics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.
tobramycin_analysis
Whole genome sequencing analysis for evolution experiments of P. aeruginosa and A. baumannii propagated in tobramycin
public_health_bacterial_genomics
public_health_viral_genomics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2
michellescribner's Repositories
michellescribner/pa_nutrient
Analysis of whole genome sequencing data for Pseudomonas aeruginosa populations propagated in cystic fibrosis nutrients with and without biofilm selection
michellescribner/prophage
Analysis of read depth in evolved populations and clones of P. aeruginosa with prophage activation
michellescribner/tobramycin_analysis
Whole genome sequencing analysis for evolution experiments of P. aeruginosa and A. baumannii propagated in tobramycin
michellescribner/dissertation
michellescribner/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
michellescribner/gambit
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
michellescribner/public_health_bacterial_genomics
michellescribner/public_health_bioinformatics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.