michelligf

michelligf's Stars

• microbma/earthnetwork

  Microbial co-occurrence network inferred from Earth Microbiome Project

  Language:R2512

• huangnengCSU/compleasm

  A genome completeness evaluation tool based on miniprot

  Language:Python17617

• nbo245/GD4a

  Language:Perl1

• galaxyproject/galaxy

  Data intensive science for everyone.

  Language:Python1.4k1k

• LepistaBioinformatics/blutils

  Utilities to run and find consensus sequence over the BlastN results.

  Language:Rust3

• LepistaBioinformatics/clean-base

  This project contain useful for Rust projects.

  Language:Rust1

• LepistaBioinformatics/mycelium

  The Mycelium is a permissioner application. Their main goal is the storage and maintenance of identities permissions.

  Language:Rust31

• amvarani/shinyCircos

  an R/shiny application for creation of Circos plot interactively

  1

• amvarani/biocode

  Bioinformatics code libraries and scripts

  1

• daattali/beautiful-jekyll

  ✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

  Language:HTML5.4k16.2k

• phac-nml/staramr

  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

  Language:Python11726

• marie-simonin/Seed-Microbiota-Database

  Data and Code associated to Simonin et al. 2021 BioRxiv Seed Microbiota Database

  21

• sirselim/jetson_nanopore_sequencing

  A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

  10711

• Asabeneh/30-Days-Of-Python

  30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos may help too: https://www.youtube.com/channel/UC7PNRuno1rzYPb1xLa4yktw

  Language:Python42.5k8.1k

• bioinfo-fcav/metatransapps

  Applications for Metatranscriptomics Data Analysis

  Language:Shell2

• geronimp/enrichM

  Toolbox for comparative genomics of MAGs

  Language:Python8022

• harvardinformatics/bioinformatics-coffee-hour

  Short lessons from FAS Informatics coffee hour

  Language:HTML14147

• harvardinformatics/GenomeAnnotation

  Best practices and workflow for genome annotation

  Language:Python6812

• zhaoshuoxp/RSeqPlots

  R scripts for NGS data visualization

  Language:R126

• jbisanz/AmpliconSeq

  A set of protocols and pipelines for construction and analysis of 16S rRNA amplicon libraries

  Language:Python69

• ShingoMiyauchi/PRINGO

  Proteomic Information Navigated Genomic Outlook (PRINGO) + Transposon Identification Nominative Genome Overview (TINGO).

  Language:R51

• SegataLab/panphlan

  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples

  Language:Python436

• cmgvesth/cmgfunc

  CMGfunc, functional protein annotation of bacterial proteins (Comparative Microbial Genomics functions)

  Language:Perl32

• eggnogdb/emapper-benchmark

  Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.

  Language:Jupyter Notebook216

• jts/assembly_accuracy

  tools for assessing the accuracy of genome assemblies

  Language:Python344

• bhattlab/lathe

  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing

  Language:Python6918

• edgardomortiz/vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  Language:Python29285

• BikLab/BITMaB2-Tutorials

  Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpus Christi, TX (January 15-19, 2018)

  Language:Shell2111

• sestaton/sesbio

  Bioinformatics scripts for genome analysis

  Language:Perl175

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k623