microbemarsh

Postdoc focused on microbial genomics. Bridging the gap between biologists and computer scientists.

Houston Methodist Research InstituteHouston, TX, USA

Pinned Repositories

hostile
Precise host read removal
Language:Python84 3 524
microbiome-metabolome-curated-data
Language:HTML61 4 826
ANCOMBC
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
Language:R118 7 22029
custom_shells
My custom genomic analysis tools
Language:Shell0 1 00
microbemarsh.github.io
Personal website
Language:HTML0 1 00
SAME2022
Nanopore 16S rDNA analysis of spatially distributed St. Lawrence River water samples
Language:Shell1 1 00
Sanger-MinION-Comparison
0 1 00
aviary
A hybrid assembly and MAG recovery pipeline (and more!)
Language:Python87 5 12613
adult_abx_tbi
Antibiotic treatment induces microbiome dysbiosis and reduction of neuroinflammation following traumatic brain injury in mice
Language:Shell00
covid_biome
Covid-19 gut microbiome analysis
Language:Python00

microbemarsh's Repositories

microbemarsh/SAME2022
Nanopore 16S rDNA analysis of spatially distributed St. Lawrence River water samples
Language:Shell1 1 00
microbemarsh/custom_shells
My custom genomic analysis tools
Language:Shell0 1 00
microbemarsh/microbemarsh.github.io
Personal website
Language:HTML0 1 00
microbemarsh/Sanger-MinION-Comparison
0 1 00
microbemarsh/scarf
A pipeline to predict functions from long read 16S microbiome data