microbiomedata/DataHarmonizer

Issues

• How and where to credit upstream DH developers

  #141 opened a year ago by turbomam
  2

• Consider if "DNA Collection Site" is redundant and remove

  #156 opened a year ago by pvangay
  28

• This repo should be archived?

  #184 opened a year ago by mslarae13
  0

• DNase not DNAse

  #169 opened a year ago by turbomam
  6

• Update Elevation help text to include units

  #157 opened a year ago by pvangay
  9

• Provide more detail in "Volume in uL" description

  #155 opened 2 years ago by pvangay
  1

• post-linkml2dh for microbiomedata/sheets_and_friends

  #171 opened 2 years ago by turbomam
  0

• combine mixs modified and (implicit as-is) sections

  #173 opened 2 years ago by turbomam
  0

• "Depth, meters" should be a required field

  #159 opened 2 years ago by pvangay
  6

• Consolidate storage condition terms

  #167 opened 2 years ago by pvangay
  3

• All MIxS required terms should be required and highlighted yellow

  #150 opened 2 years ago by pvangay
  2

• https://data.dev.microbiomedata.org/submission/samples does not allow saving invalid sheets

  #139 opened 2 years ago by turbomam
  1

• lifecycle of modified DH JS files

  #175 opened 2 years ago by turbomam
  4

• expose sheets_and_friends DH interfaces on GH pages

  #174 opened 2 years ago by turbomam
  1

• Update JGI terms that should not be required

  #162 opened 2 years ago by pvangay
  5

• Fix typos in term descriptions

  #154 opened 2 years ago by pvangay
  3

• Need clarity on available DH templates

  #172 opened 2 years ago by pvangay
  2

• Provide improved guidance for “experimental factor- other"

  #163 opened 2 years ago by pvangay
  1

• Make description and guidance for "sample linkage" consistent

  #166 opened 2 years ago by pvangay
  1

• Update validation rules for DNA Well Number

  #160 opened 2 years ago by pvangay
  4

• Rename "NMDC fields esp. GOLD paths" to "NMDC"

  #164 opened 2 years ago by pvangay
  2

• All "MIxS required where applicable" terms should be highlighted purple (recommended)

  #151 opened 2 years ago by pvangay
  2

• run spell-check over description and guidance in data.tsv

  #170 opened 2 years ago by turbomam
  0

• Fix broken URL in Sample collection device description

  #153 opened 2 years ago by pvangay
  2

• Switch to Google sheet in schemasheets format after GSP

  #127 opened 2 years ago by turbomam
  1

• Add GOLD treeviewer to GOLD term guidance

  #152 opened 2 years ago by pvangay
  1

• Make URLs hyperlinked in the help text

  #149 opened 2 years ago by pvangay
  1

• “DNA Sample ID” should be unique

  #158 opened 2 years ago by pvangay
  1

• review sets of enums

  #136 opened 2 years ago by turbomam
  0

• Add validation rules for DNA Container Label

  #161 opened 2 years ago by pvangay
  1

• sample shipped amount: add validation of units

  #165 opened 2 years ago by pvangay
  0

• prepopulate "environmental package" based on previous page selection

  #168 opened 2 years ago by pvangay
  1

• The GOLD path columns may not be in the right order

  #147 opened 2 years ago by turbomam
  0

• make a new valid data file that matches the new column including units

  #148 opened 2 years ago by turbomam
  0

• clarify save vs export of DH sheets

  #145 opened 2 years ago by turbomam
  1

• set SNTC sheet to send alerts

  #143 opened 2 years ago by turbomam
  1

• make a release!

  #142 opened 2 years ago by turbomam
  1

• https://data.dev.microbiomedata.org/submission/ isn't using the latest DH template

  #140 opened 2 years ago by turbomam
  1

• remove req/rec/opt distinctions in DH sections?

  #132 opened 2 years ago by turbomam
  0

• include section title in sheet2dataharmonizer.model_sections.build_section_table

  #119 opened 2 years ago by turbomam
  0

• DH Section review

  #126 opened 2 years ago by turbomam
  1

• didn't test_report_enum_diffs previously report permissible value differences?

  #138 opened 2 years ago by turbomam
  0

• poetry complains about legacy build resources

  #135 opened 2 years ago by turbomam
  0

• get validation rules from validation_converter tab

  #133 opened 2 years ago by turbomam
  0

• Rename dev template to something like soil_emsl_jgi_mg

  #129 opened 2 years ago by turbomam
  0

• How will we pre-build different DH interfaces

  #128 opened 2 years ago by turbomam
  2

• merge conflicts between #123 and master?

  #124 opened 2 years ago by turbomam
  0

• include user facility and required units in column headers as appropriate

  #122 opened 2 years ago by turbomam
  0

• schema validation, in makefile, that doesn't depend on gen-yaml (vs annotations)

  #121 opened 2 years ago by turbomam
  0

• re-enable annotations in makefile

  #118 opened 2 years ago by turbomam
  0