microbiomedata/DataHarmonizer

DRY about linkml model enrichment in Makefile

Closed this issue · 2 comments

@cmungall , could you help me try to generalize a pattern for running LME enum annotation over several different enums, in series?

We'll probaly want to tune the ontology_string, max_cosine and trim_parentheticals for each requested_enum_name

I do remember your request to separate the annotation from the NMDC DH build

As of now, the enums are

  • analysis_type_enum
  • cur_land_use_enum
  • dna_cont_type_enum
  • dna_dnase_enum
  • dna_sample_format_enum
  • drainage_class_enum
  • env_package_enum
  • fao_class_enum
  • growth_facility_enum
  • oxygen_relationship_enum
  • profile_position_enum
  • samp_biotic_relationship_enum
  • sample_type_enum
  • soil_horizon_enum
  • storage_condt_enum
  • tillage_enum

Closing in preparation of archiving this fork. Use the main DataHarmonizer repo for development.