microbiomedata/DataHarmonizer

Issues

• Is the package column in biosample_identification_slots being processed?

  #37 opened 3 years ago
  0

• columns to add to one or more Soil-NMDC-Template_Compiled tabs?

  #35 opened 3 years ago
  1

• workarround required for including env_package from biosample_identification_slots in DH interface

  #32 opened 3 years ago
  3

• Failed to map dcterms:default on file -> save

  #31 opened 3 years ago
  3

• make better use of print statements from linkml_to_dh_light

  #26 opened 3 years ago
  1

• update test_sntc.py to reflect new strucutre of Soil-NMDC-Template_Compiled

  #25 opened 4 months ago
  1

• bugs in data.tsv (and upstream yaml) from use_modular_gd.py

  #24 opened 4 months ago
  6

• Overlapping subset and class names: soil

  #23 opened 4 months ago
  1

• conflicts between MIxS and NMDC's MIxS namespaces

  #22 opened 4 months ago
  2

• Generate valid MIxS soil + NMDC biosample LinkML based on Soil-NMDC-Template_Compiled

  #21 opened 4 months ago
  4

• general factoring

  #20 opened 3 years ago
  0

• make: *** [Makefile:42: target/nmdc_biosample_generated.yaml] Error 1

  #19 opened 3 years ago
  2

• Single, long sheet with all packages x slots in Soil-NMDC-Template_Compiled?

  #18 opened 4 months ago
  10

• Run make_data script over dev template following changes to main.css, main.js, etc.

  #17 opened 4 months ago
  1

• Rules for editing Soil-NMDC-Template_Compiled?

  #16 opened 4 months ago
  2

• implement more regex validation patterns for MIxS string serializations and NMDC classes

  #14 opened 3 years ago
  2

• prepare more/better valid and invalid data files for DH

  #13 opened 4 months ago
  1

• click UI for linkml_round_trips/just_exacts.py

  #12 opened 3 years ago
  1

• inconsistent prefix syntax for asserting prefixes

  #11 opened 4 months ago
  2

• add hierarchical indentation of enums back in

  #10 opened 4 months ago
  2

• add enum meanings back in

  #9 opened 4 months ago
  2

• Rename linkml_round_trips directory

  #8 opened 3 years ago
  0

• Keep an eye on warnings in target/soil_biosample_interleaved_generated.log

  #7 opened 4 months ago
  1

• expectations of SNTC from test_sntc.py

  #6 opened 4 months ago
  3

• test from mixs-source not running

  #5 opened 3 years ago
  1

• Document Google sheets authentication

  #4 opened 4 months ago
  1

• Getting mixs-source submodule from tubomam org

  #3 opened 4 months ago
  3

• Using submodules to ensure availability of mixs-source and nmdc-schema YAML files

  #2 opened 4 months ago
  3

• Page build failed

  #1 opened 3 years ago
  2