Pinned Repositories
bio-formats-matlab
**Experimental** Bio-Formats Matlab and GNU Octave bindings
centos-systemd-jupyter-notebook
Base notebook for running bash in JupyterHub with a CentOS 7 System image
conda-omero-web
OMERO.web Conda package
idr0083-sars-cov2-notebook
An example of reading a 13 gigapixel SARS-CoV-2 image (around 27 GB on disk) in Jupyter using Zarr
jupyter-omero-authenticator
Use OMERO to authenticate with JupyterHub
ome-sysops-notebooks
Notebooks with examples of managing the OME Kubernetes systems
omero-mapr-graphql
Query OMERO.mapr IDR metadata using GraphQL
omero-py-alpine-docker
Minimal OMERO.py image based on Alpine Linux
omero-server-setup
Create, initialise and upgrade OMERO databases
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Microscope Pony's Repositories
microscopepony/bio-formats-matlab
**Experimental** Bio-Formats Matlab and GNU Octave bindings
microscopepony/idr0083-sars-cov2-notebook
An example of reading a 13 gigapixel SARS-CoV-2 image (around 27 GB on disk) in Jupyter using Zarr
microscopepony/omero-mapr-graphql
Query OMERO.mapr IDR metadata using GraphQL
microscopepony/conda-omero-web
OMERO.web Conda package
microscopepony/jupyter-omero-authenticator
Use OMERO to authenticate with JupyterHub
microscopepony/omero-oauth
OMERO.web application to allow OAuth2 login to OMERO
microscopepony/omero-server-setup
Create, initialise and upgrade OMERO databases
microscopepony/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
microscopepony/.github
Community health files for the @microscopepony organization
microscopepony/bio-formats-bundles
**Experimental** Distribution bundles for bio-formats releases
microscopepony/bio-formats-imagej
**Experimental** Bio-Formats ImageJ plugin for image import and export
microscopepony/bio-formats-test
**Experimental** Bio-Formats integration tests
microscopepony/bio-formats-tools
**Experimental** Bio-Formats command line tools
microscopepony/conda-django-pipeline
A Conda package for django-pipeline for use with OMERO.web
microscopepony/conda-omero-dropbox
A Conda package for OMERO.dropbox
microscopepony/conda-omero-marshal
A Conda package for OMERO.marshal.
microscopepony/conda-omero-server
A Conda package for OMERO.server.
microscopepony/conda-omero-server-setup
OMERO.server setup and database management Conda package
microscopepony/conda-whitenoise
A conda-smithy repository for whitenoise.
microscopepony/conda-zeroc-ice-bin
Zeroc Ice conda package with binaries and jars for OMERO
microscopepony/conda-zeroc-ice36
zeroc-ice Conda package for OMERO
microscopepony/fs-omero-pyfs
OMERO PyFilesystem2 implementation
microscopepony/idr-count-publications
Which journals are most published in the IDR?
microscopepony/idr-montage
microscopepony/idr-release-stats
Plot IDR release stats
microscopepony/idr-upload-js-s3-explorer
AWS JavaScript S3 Explorer is a JavaScript application that uses AWS's JavaScript SDK and S3 APIs to make the contents of an S3 bucket easy to browse via a web browser.
microscopepony/idr0015-tara-oceans-geospatial
This notebook shows how to plot geospatial metadata attached to the samples gathered by the Tara Oceans project.
microscopepony/omero-asyncio
Python asyncio OMERO client
microscopepony/omero-cli-database
OMERO server database management plugin
microscopepony/omero-cli-externalconfig
OMERO server external configuration plugin