Pinned Repositories
adapterremoval
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
AGFusion
Python package to annotate and visualize gene fusions.
Anaquin
Statistical analysis of sequins in C++ and R
awesome-mac
Now we have become very big, Different from the original idea. Collect premium software in various categories.
BaiduNetdiskPlugin-macOS
For macOS.百度网盘 破解SVIP、下载速度限制~
bcbio_validation_workflows
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
Blacklist
Application for making ENCODE Blacklists
bs_sim
Bisulfite treatment simulator for a DNA sequence
chrome
VPN Chrome is Google Chromium based browser with built-in VPN capability to let users surf the Internet in a secure and private way.
microtsiu's Repositories
microtsiu/Anaquin
Statistical analysis of sequins in C++ and R
microtsiu/EAGLE
Enhanced Artificial Genome Engine: next generation sequencing reads simulator
microtsiu/rnacocktail
microtsiu/IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
microtsiu/metasv
MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
microtsiu/speedseq
A flexible framework for rapid genome analysis and interpretation
microtsiu/SparkSeq
microtsiu/bs_sim
Bisulfite treatment simulator for a DNA sequence
microtsiu/indelseek
Detect complex indels from next-generation sequencing reads
microtsiu/InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
microtsiu/VarDictJava
VarDict Java port
microtsiu/AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
microtsiu/Damage-estimator
microtsiu/WGBSSuite
The code from the WGBSsuite paper
microtsiu/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
microtsiu/jvarkit
Java utilities for Bioinformatics
microtsiu/pyflow
A lightweight parallel task engine
microtsiu/pullseq
Utility program for extracting sequences from a fasta/fastq file
microtsiu/PlasmaSeq
Analyze CNVs of ctDNA
microtsiu/ctDNASomaticVariantCall.jl
Somatic Variant Call for ctDNA
microtsiu/methyLiftover
A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set
microtsiu/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
microtsiu/phenolyzer
phenotype-based prioritization of candidate genes for human diseases
microtsiu/pileup2base
Parse samtools pileup file to get how many bases and what kind of bases are called