nextflow run trinotate.nf --genome /home/lorencm/trinotate/Trinotate-3.0.2/sample_data/data/Trinity.fasta --chunks 4 --swissProt /home/lorencm/trinotate/databases/uniprot_sprot.pep --pfamA /home/lorencm/trinotate/databases/Pfam-A.hmm --trinotateSqlite /home/lorencm/trinotate/databases/Trinotate_v3.sqlite --output /home/lorencm/trinotate/