/cerebroAppLite

Shiny app for interactively visualizing single cell RNA-seq data

Primary LanguageHTMLMIT LicenseMIT

License: MIT Lifecycle: stable

This is a continuation of the excellent cerebroApp R package from Roman Hillje, which was sadly discontinued. This is supposed to be a lightweight version that only keeps the key functions and focuses on speed.

The package can be installed with

remotes::install_github('mihem/cerebroAppLite')

cerebroApp

R package that provides an interactive visualization of single cell RNA-seq data. Seurat v3, v4 and v5 are supported. To increase speed use h5 or BPCells matrix.