mikafontaine
Population geneticists – CNRS researcher at the Centre for Infectious Diseases & Vectors: Ecology, Genetics, Evolution, & Control (IRD, CNRS, U-MPL)
CNRS - MIVEGECMontpellier, FR
mikafontaine's Stars
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
lisa-lab/pylearn2
Warning: This project does not have any current developer. See bellow.
lh3/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
petl-developers/petl
Python Extract Transform and Load Tables of Data
Blosc/bcolz
A columnar data container that can be compressed.
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
tj/node-querystring
querystring parser for node and the browser - supporting nesting (used by Express, Connect, etc)
tiagoantao/bioinf-python
Python for Bioinformatics
ANGSD/angsd
Program for analysing NGS data.
mfumagalli/ngsTools
Programs to analyse NGS data for population genetics purposes
lh3/psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
arq5x/bedtools
A powerful toolset for genome arithmetic.
alimanfoo/csvvalidator
A small CSV validator library for Python.
petl-developers/petlx
Optional extensions for petl based on third party libraries.
millanek/tutorials
Tutorials on phylogenetic and phylogenomic inference
mathii/gdc
Short scripts for converting genetic data between formats.
petrikemppainen/LDna
LDna: an R package to perform linkage disequilibrium network analysis
stephenturner/solarplot
Mitochondrial Solar Plot
therkildsen-lab/lcwgs-simulation
johnomics/Martin_Davey_Jiggins_evaluating_introgression_statistics
Code and data for "Evaluating statistics for the identification of introgressed loci" by Simon H. Martin, John W. Davey and Chris D. Jiggins.
ANGSD/ngsPSMC
nicfel/CoupledMCMC
Adaptive parallel tempering for Beast2
jarobin/vaquitagenomics2022
jorgeamaya/automatic_genome_assembly
Scripts to automatize the assembly of mitochondrial genomes (or small genomes, small genomic regions, etc.) using the programm MITObim_1.9.pl
nicfel/Isolation-With-Migration
nicfel/speciesnetwork
Bayesian Inference of Species Networks from Multilocus Sequence Data (a package for BEAST2)