Population diversity module for GENE360 at University of Otago using data from the 1000 Genomes Project.
Rendered version of R markdown handout can be viewed inline at:
R markdown
- GENE360-popDiv.Rmd: R markdown file for analysis of 1000 Genomes Project data.
- GENE360-popDiv.md: Github markdown version of the R markdown output.
R helper functions
- alleleCounts.R
- calcMajorFreq.R
- pcaGenotypes.R
- plotPCA.R
Data
- GENE360snpData.txt
- GENE360snpAncestry.txt
- subPopColours.RData
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