/GENE360-PopDiv

Population diversity module for GENE360 at University of Otago using data from 1000 Genomes Project

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GENE 360 - Population diversity module

Population diversity module for GENE360 at University of Otago using data from the 1000 Genomes Project.

Rendered version of R markdown handout can be viewed inline at:

R markdown

  • GENE360-popDiv.Rmd: R markdown file for analysis of 1000 Genomes Project data.
  • GENE360-popDiv.md: Github markdown version of the R markdown output.

R helper functions

  • alleleCounts.R
  • calcMajorFreq.R
  • pcaGenotypes.R
  • plotPCA.R

Data

  • GENE360snpData.txt
  • GENE360snpAncestry.txt
  • subPopColours.RData

This work is licensed under a Creative Commons Attribution 4.0 International License.
You should have received a copy of the license along with this work. If not, see:
http://creativecommons.org/licenses/by/4.0/ CC-BY-4.0