mikblack/hpgp-basics

Beginning framework for short workshop on using/exploring the current human pangenome draft

Human Pangenome Project basics

Beginning framework for short workshop on using/exploring the current human pangenome draft

Human Pangenome resources:

Human pangenome project is here:

https://humanpangenome.org/

and GitHub resources:

https://github.com/human-pangenomics/hpp_pangenome_resources

and current assemblies:

https://github.com/human-pangenomics/HPP_Year1_Assemblies

and Deep Variant calls for 1000 Genomes Project mapped to minigraph-cactus version of pangenome:

https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=publications/PANGENOME_2022/DeepVariant-1000GPcalls/

Tutorials:

https://github.com/human-pangenomics/hprc-tutorials

HUGO meeting tutorial:

https://github.com/human-pangenomics/hprc-tutorials/tree/main/pangenome/240408_HumanGenomeMeeting_HUGO

Examples:

• Deletions in the IRGM region
• Novel regions - chromosome 5