mikecormier
Bioinformatics Scientist, Data Scientist, and Director, with a focus on Genomics and Data Science to improve Precision and Genomic Medicine.
Fabric Genomics
Pinned Repositories
ggd-cli
The command-line interface to GGD
ggd-metadata
ggd conda channel metadata
ggd-recipes
conda recipes for genomic data
gogetdata.github.io
bioawk
BWK awk modified for biological data
bioconda-utils
Utilities for building and managing bioconda recipes
ConSplice
Constrained Splicing python module
ConSplice-manuscript
mosdepth_region_vis
SVAFotate
Annotate Structural Variants with Population Allele Frequency Info
mikecormier's Repositories
mikecormier/ConSplice
Constrained Splicing python module
mikecormier/SVAFotate
Annotate Structural Variants with Population Allele Frequency Info
mikecormier/ConSplice-manuscript
mikecormier/mosdepth_region_vis
mikecormier/bioawk
BWK awk modified for biological data
mikecormier/bioconda-utils
Utilities for building and managing bioconda recipes
mikecormier/ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
mikecormier/conda-build
Commands and tools for building conda packages
mikecormier/ggd-cli
The command-line interface to GGD
mikecormier/ggd-recipes
conda recipes for genomic data
mikecormier/gsort
sort genomic data
mikecormier/neoseq-seqcover-nf
mikecormier/oncogemini
mikecormier/peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
mikecormier/samplot
Plot structural variant signal form a BAM
mikecormier/seqcover
seqcover allows user to view coverage for hundreds of genes and dozens of samples
mikecormier/trytravis-ggd-recipes-testing
conda recipes for genomic data