mikecuoco
Ph.D. candidate in Bioinformatics and Systems Biology at UC San Diego.
University of California, San DiegoLa Jolla, CA
Pinned Repositories
BarcodeMate
bioconda-recipes
Conda recipes for the bioconda channel.
bisb-bootcamp-2020-module08
BloodBrainClassifier
cluster_dotfiles
conda-auto-env
Automatically activate a conda environment when entering a folder with an environment.yml file
cookiecutter-compbio
A cookiecutter template for computational biology projects
general_functions
My general-use functions for bioinformatics
michaelcuoco.com
Personal website
sz_slavseq
SLAV-seq analysis pipeline for SZ dataset
mikecuoco's Repositories
mikecuoco/BloodBrainClassifier
mikecuoco/bisb-bootcamp-2020-module08
mikecuoco/conda-auto-env
Automatically activate a conda environment when entering a folder with an environment.yml file
mikecuoco/cookiecutter-compbio
A cookiecutter template for computational biology projects
mikecuoco/cookiecutter-computational-biology
A boilerplate for reproducible computational biology projects.
mikecuoco/cookiecutter-sequencing-data
A template for sequencing data storage and preprocessing.
mikecuoco/cv
Mike Cuoco's Curriculum Vitae
mikecuoco/jackstraw
implements jackstraw methods in python test for significant PCs and associations between variables and PCs discovered in the data.
mikecuoco/linux_setup
script and dotfiles for logging on to a new linux-based computed cluster
mikecuoco/my-rmd-templates
📄 A selection of minimal examples used to highlight R Markdown templates, as referred to in the "R Markdown Definitive Guide"
mikecuoco/pub_tweets
mikecuoco/smartseq2
A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol.
mikecuoco/SQuIRE
Software for Quantifying Interspersed Repeat Expression