mikessh

mikessh's Stars

• statbiophys/HLAGuessr

  Language:Python162

• tymmej/ExportPhotosLibrary

  Export Library from Photos.app (Mac OS X 10.10-10.13) to folders

  Language:Python248

• tidyomics/tidyomics

  Easily install and load packages from the tidyomcis ecosystem

  Language:R60

• udlbook/udlbook

  Understanding Deep Learning - Simon J.D. Prince

  Language:Jupyter Notebook6.1k1.3k

• FPPGroup/CodonBERT

  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.

  Language:Python151

• smarco/WFA2-lib

  WFA-lib: Wavefront alignment algorithm library v2

  Language:C15735

• HeliXonProtein/OmegaFold

  OmegaFold Release Code

  Language:Python54776

• ddiem-ri-4D/epiTCR-KDA

  epiTCR-KDA: Knowledge Distillation model on Dihedral Angles for TCR-peptide prediction

  Language:Python3

• ailiskab-hub/nlp_tcr_predictor

  Language:Jupyter Notebook4

• oxpig/ANARCI

  Antibody Numbering and Antigen Receptor ClassIfication

  Language:Python18189

• nikitasius/Telegraher

  Telegram fork with blackjack and hookers

  Language:Java60947

• blueagler/QuillBot-Premium-Crack

  Unlock: Paraphrase unlimited words, 7 Writing mode , 4 Synonyms options, 6000 Summarizer word limit, 15 Sentences processed at once, Unlimited Freeze Words and phrases (101k active users' choices)

  Language:JavaScript912149

• kyegomez/AlphaFold3

  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

  Language:Python69892

• mourisl/T1K

  T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.

  Language:C447

• immunoteam/journey_to_your_self

  2

• andrewrech/antigen.garnish

  Language:R4613

• KindXiaoming/pykan

  Kolmogorov Arnold Networks

  Language:Jupyter Notebook14.7k1.3k

• chapmanb/bcbb

  Incubator for useful bioinformatics code, primarily in Python and R

  Language:Python609243

• ncborcherding/Trex

  Using TCR and expression for sequence embedding

  Language:R471

• rapidfuzz/RapidFuzz

  Rapid fuzzy string matching in Python using various string metrics

  Language:C++2.6k118

• mrabarnett/mrab-regex

  Language:C43749

• lmdu/pyfastx

  a python package for fast random access to sequences from plain and gzipped FASTA/Q files

  Language:C26222

• Miriam-Zu/Ovarian

  Specific peripheral-blood T cell clones provide information about ovarian tumors

  Language:Jupyter Notebook1

• s175573/iSMART

  Highly specific clustering of T cell receptor CDR3s

  Language:Python4232

• xinyu-dev/annotate_v

  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python

  Language:Jupyter Notebook284

• xinyu-dev/igblast

  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python

  Language:Jupyter Notebook284

• vpc-ccg/genion

  GENe fusION

  Language:C++71

• vpc-ccg/calib

  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.

  Language:HTML389

• saezlab/decoupleR

  R package to infer biological activities from omics data using a collection of methods.

  Language:R19024

• JamieHeather/airrc2hlaguessr

  Convert TCR repertoires from AIRR-C to HLAGuessr format

  Language:Python2