/manifold_clustering_reduction

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Overview

docs Documentation Status
tests

Coverage Status Coverage Status
Codacy Code Quality Status
package

Perform dimensional reduction and clustering on mass cytometry data and visualize using Plotly Dash

  • Free software: GNU Lesser General Public License v3 or later (LGPLv3+)

Installation

pip install mass-cytometry-reduction

You can also install the in-development version with:

pip install https://github.com/milescsmith/mass_cytometry_reduction/archive/master.zip

Documentation

https://mass_cytometry_reduction.readthedocs.io/

Development

To run all the tests run:

tox

Note, to combine the coverage data from all the tox environments run:

Windows 
set PYTEST_ADDOPTS=--cov-append
tox
Other 
PYTEST_ADDOPTS=--cov-append tox