milnus
PostDoc at The Novo Nordisk Center for Biosustainability | C-1 metabolism group | Microbial genomics | Multi omics analysis
Denmark
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
Corekaburra
Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes
CRISPRi-seq
Design and efficiency evaluation of genome-wide sgRNA libraries for CRISPRi-seq
Cross_replicore_similarities
Scripts to identify regions across complete genomes that have high similarity. These can be used to produce 'shadow plots' with relative genome positions
Magphi
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
Pan_genome_benchmarking
Collection of scripts and data to benchmark pan-genome tools
panaroo
An updated pipeline for pangenome investigation
pioreactor_turbidostat_shiny
An R shiny app to analyse pioreactor OD600 measurements when running in turbidostat mode
PIRATE
A toolbox for pangenome analysis and threshold evaluation.
resplat-github-workshop
Workshop for Github (Research Platform Services)
milnus's Repositories
milnus/Magphi
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
milnus/Corekaburra
Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes
milnus/pioreactor_turbidostat_shiny
An R shiny app to analyse pioreactor OD600 measurements when running in turbidostat mode
milnus/bioconda-recipes
Conda recipes for the bioconda channel.
milnus/CRISPRi-seq
Design and efficiency evaluation of genome-wide sgRNA libraries for CRISPRi-seq
milnus/Cross_replicore_similarities
Scripts to identify regions across complete genomes that have high similarity. These can be used to produce 'shadow plots' with relative genome positions
milnus/Pan_genome_benchmarking
Collection of scripts and data to benchmark pan-genome tools
milnus/panaroo
An updated pipeline for pangenome investigation
milnus/PIRATE
A toolbox for pangenome analysis and threshold evaluation.
milnus/resplat-github-workshop
Workshop for Github (Research Platform Services)
milnus/unique_CRISPRi_segments
Small iPython notebook to run seqkit and find number of unique CRISPRi sequences in a set of sequences