milospjanic/gwasCatalogFullParseBinomialMod1Ggplot
Script downloads GWAS Catalog, converts it into bed file with columns: chr position position+1 proxy_gene phenotype, then fully parses GWAS Cat. for each unique category, performs modified binomial statistics on overlaps with the input file. Outputs are tables with binomial -log10pvalues and fold changes and graphs in ggplot2.
Shell
No issues in this repository yet.