Scripts To run LPJ-GUESS:
- Build LPJ-GUESS cd lpj_guess/src/guess_4.0.1/ ./build_lpj_guess.sh
On gadi, LPJ-GUESS doesn't find a necessary library
NETCDF_CXX_LIBRARY NETCDF_CXX_LIBRARY-NOTFOUND
This has to be edited by hand, i.e. change NETCDF_CXX_LIBRARY-NOTFOUND to libnetcdf_c++4.so:
- press c
- press t
- press enter and change NETCDF_CXX_LIBRARY-NOTFOUND to /apps/netcdf/4.7.1/lib/libnetcdf_c++4.so
- press enter to confirm
- press t to end writing
- press c
- press g to generate
In addition, a file needs to be adjusted before the utilities are compiled:
cd utils/guess_utilities_1.3/gmap/libproj4/misc/
vim PJ_ob_tran.c
Change line 45
// change by Martin to compile, 20/01/2020
if (xy.x != HUGE_VAL && P->rot) {
//if (xy.x != HUGE && P->rot) {
- Compile utilities (ask Martin but n.e.v.e.r. touch again)
make
- Start run
cd ../../runs/global_annual_CRUNCEP/
./clean_up.sh
./initial_setup.sh
./submit_to_raijin.sh
LPJ-GUESS produces ASCII output for landpoints only, convert_annual_ascii_to_netcdf_only_landpoints.py converts all land points that are in the annual output to netCDF (278x701 grid points); convert_annual_ascii_to_netcdf.py fills the gaps, i.e. the ocean points, with NaN and converts the annual output to netCDF (320x720 grid points).