minillinim

Brisbane Australia

Pinned Repositories

BamM
Do things with BAM/BWA
Language:Python2 2 01
BamTyper
Working with paired reads in BAM format
Language:Python21
ellipsoid
Example code for enclosing points in an elipsoid
Language:Python54 7 516
gff2fasta
convert a gff file into fasta format
Language:Perl2 2 07
GroopM
Place holder for the old GroopM site
Language:Python3 1 50
mikezbioscripts
A collection of scripts that I used to use. Abandoned now, use them at your own peril...
Language:Perl3 3 32
SimpleHMMER
Super simple wrapper for running hmmer3 and parsing the output
Language:Python6 2 25
stackedBarGraph
stackedBarGraph
Language:Python39 3 521
templates
A set of templates which make coding more funner!
Language:Shell3 2 07

minillinim's Repositories

minillinim/BamTyper
Working with paired reads in BAM format
Language:Python21
minillinim/gff2fasta
convert a gff file into fasta format
Language:Perl2 2 07
minillinim/ionPairer
create a rough scaffold using ion torrent MP reads
Language:Perl2 2 16
minillinim/SaSSY
Short read assembler for illumina-type DNA sequence data
Language:C++21
minillinim/explodeGenbank
Separate a multiple genbank file into separate records
Language:Perl1
minillinim/ParseM
ParseM
Language:C1
minillinim/sam2fpkg
Convert a sam mapping file and gff3 annotation file to find transcriptomic level in microbial transciptomic data sets
Language:Perl13
minillinim/bam2fpkc
Abundance profile construction for contigs or bins
Language:Python1
minillinim/bioFuzz
bioFuzz
minillinim/bioruby-kmer_counter
A biogem for counting small kmers for fingerprinting nucleotide sequences
Language:Ruby
minillinim/callOrfs
wrapper for computational ORF calling programs
Language:Perl
minillinim/cRazyscripts
Scripts for manipulating data from the cazy db
Language:Perl
minillinim/CUB
Barcode metagenomic contigs based on codon usage profiling
Language:Perl
minillinim/disproportionateWalrus
Strip low copy number kmer containing reads from fastX read files
Language:Python
minillinim/MDJ
Jukebox script for XBMC -> very beta
Language:Python
minillinim/minillinim.github.com
Purdy pages for mwa
minillinim/Normaliser
Perl program for normalising ecological data tables
Language:Perl2
minillinim/profile2value
Convert a descriptive profile into a single value between 0 -> 1 using PCA
Language:Python1
minillinim/pypi
Create all the files one needs to get your code pypiable
Language:Shell
minillinim/PyroDB
Development files for a pyrotag database project written to integrate with drupal 6.20
Language:Perl
minillinim/pyseq
pyseq
Language:Python1
minillinim/randoms
random stuff
1
minillinim/readSelector
Randomly subsample N [un]paired reads from source [zipped] file[s]
Language:Python
minillinim/remoteMoose
Password management for neanderthals
Language:Python
minillinim/sammy
Stupidly simple short read simulator
Language:Perl2 1
minillinim/scriptShed
sequence manipulation scripts that are actually useful
Language:Perl
minillinim/StoreM
StoreM
Language:Python1 0
minillinim/symCalc
symCalc
Language:Python1 0
minillinim/taintedSwallow
Parse nucmer output to create contig associations
Language:Python1 0
minillinim/vitalHarshArm
Python library for creating memory efficient C++ classes
Language:Python1 0