Pinned Repositories
ParticleGraph
Graph fitting particle trajectories
n5-anndata
Convenience functions for reading and writing AnnData files
HackBrno23_introIntoImglib2AndBDV
Collection of example and try-yourself pieces of code to get familiar with ImgLib2 and BDV
imglib2
A generic next-generation Java library for image processing
imglib2-algorithm-gpl
Image processing algorithms for ImgLib2 (GPL-licensed)
imglib2-playground
Fork of the I2K tutorials for imglib2. Includes partial solutions to tasks and an implementation of an anisotropic-diffusion denoiser.
minnerbe.github.io
mpicbg
Fiji module for image transformation and related algorithms
STIM
Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
render
Render transformed image tiles
minnerbe's Repositories
minnerbe/HackBrno23_introIntoImglib2AndBDV
Collection of example and try-yourself pieces of code to get familiar with ImgLib2 and BDV
minnerbe/imglib2
A generic next-generation Java library for image processing
minnerbe/imglib2-algorithm-gpl
Image processing algorithms for ImgLib2 (GPL-licensed)
minnerbe/imglib2-playground
Fork of the I2K tutorials for imglib2. Includes partial solutions to tasks and an implementation of an anisotropic-diffusion denoiser.
minnerbe/minnerbe.github.io
minnerbe/mpicbg
Fiji module for image transformation and related algorithms
minnerbe/n5
Not HDF5
minnerbe/n5-hdf5
Best effort N5 implementation on HDF5 files (despite the irony).
minnerbe/n5-imglib2
minnerbe/n5-zarr
Zarr filesystem backend for N5
minnerbe/ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
minnerbe/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
minnerbe/stim-feedstock
A conda-smithy repository for stim.
minnerbe/stimwrap
minnerbe/stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.