Energy Landscape Analysis Toolbox (ELAT) provides functions necessary for the energy landscape analysis (Ezaki et al. Phil. Trans. R. Soc. A 375: 20160287 (2017)). This software can be run on MATLAB2016 or later versions + MATLAB Statistics and Machine Learning Toolbox.
Please refer to the user's guide (https://github.com/tkEzaki/energy-landscape-analysis/blob/master/users_guide.pdf).
You can open and test the code on MATLAB Online (MathWorks account required):
We provide a separate repository (https://github.com/tkEzaki/phase_diagram_analysis) for
- Users who want to perform the phase diagram analysis proposed in Ezaki et al. Communications Biology 3: 52 (2020).
- Users who look for function to estimate the pairwise maximum entropy model for multi-variate time-series data.