mirhambogor

mirhambogor's Stars

• harvardinformatics/snpArcher

  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

  Language:Python7233

• millanek/Dsuite

  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species

  Language:C++16125

• wpearman1996/HWE_Simulations

  Language:R1

• heliconius-maps/HeliconiusHybridSpeciation

  Language:R1

• FernandoSeixas/HeliconiusHybridSpeciation

  Language:Shell6

• simonhmartin/twisst

  Topology weighting by iterative sampling of sub-trees

  Language:Python7219

• dipetkov/eems

  Estimating Effective Migration Surfaces

  Language:HTML10228

• theo-atkinson/findgraphs-analysis

  Language:R1

• carolindahms/TreeMix

  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates a consensus tree. It plots the maximum likelihood tree with bootstrap values, drift and residuals and calculates statistics for every migration event, such as migration support, standard error and p-values.

  Language:R221

• popgenmethods/momi2

  Infer demographic history with the Moran model

  Language:Python4711

• xiaolei-lab/rMVP

  :postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

  Language:R27269

• Cloufield/GWASTutorial

  GWAS Tutorial for Beginners

  Language:Jupyter Notebook16140

• YinLiLin/CMplot

  📊 Circular and Rectangular Manhattan Plot

  Language:R524113

• JenteOttie/Goose_Genomics

  Scripts for my goose projects

  Language:Python1

• popgenmethods/smcpp

  SMC++ infers population history from whole-genome sequence data.

  Language:C++15034

• lh3/psmc

  Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

  Language:C15560

• Tom-Jenkins/mapmixture

  R package and web app for spatial visualisation of admixture on a projected map

  Language:R387

• ddarriba/jmodeltest2

  Automatically exported from code.google.com/p/jmodeltest2

  Language:Java7547

• ksamuk/pixy

  Software for painlessly estimating average nucleotide diversity within and between populations

  Language:Python11614

• nylander/catfasta2phyml

  Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

  Language:Perl6422

• jlwilliamson/jlwilliamson-patagona-blood-migration-genomics

  Language:Shell1

• beagle-dev/beagle-lib

  general purpose library for evaluating the likelihood of sequence evolution on trees

  Language:C++13157

• grenaud/ROHan

  Joint inference of heterozygosity rates and runs of homozygosity

  Language:C++114

• amkozlov/raxml-ng

  RAxML Next Generation: faster, easier-to-use and more flexible

  Language:C++38964

• simonhmartin/genomics_general

  General tools for genomic analyses.

  Language:Python33893

• asalcedo31/fastsimcoal2

  parameter files for fastsimcoal2

  Language:Shell7

• winkyLWJ/Radseq_Vatica_Guangxiensis

  Language:R2

• marqueda/SFS-scripts

  A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files

  Language:Python204

• edgardomortiz/vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  Language:Python28985

• ANGSD/angsd

  Program for analysing NGS data.

  Language:C++22950