Pinned Repositories
2015-03-23-hbc-swc
materials for R session HBC software carpentry workshop
2015-07-01-esu
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bcbio_rnaseq_workflow
docker_config
A repo for dockerfiles for various NGS analyses
GU-BloodBrain
differential expression analysis mouse cortex versus lung
Intro-to-Unix-QMB
Workshop for Intro to Unix
msu_ngs2015
DE analysis module for Week3
north_cordblood
a re-analysis of microarray data (HTA 2.0 arrays) after sample swap
Smoller-Brainspan
reanalysis of Brainspan data
mistrm82's Repositories
mistrm82/msu_ngs2015
DE analysis module for Week3
mistrm82/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
mistrm82/bcbio_rnaseq_workflow
mistrm82/docker_config
A repo for dockerfiles for various NGS analyses
mistrm82/Intro-to-Unix-QMB
Workshop for Intro to Unix
mistrm82/north_cordblood
a re-analysis of microarray data (HTA 2.0 arrays) after sample swap
mistrm82/2015-03-23-hbc-swc
materials for R session HBC software carpentry workshop
mistrm82/angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
mistrm82/bcbio.rnaseq
Automatic RNA-seq DE caller benchmarking
mistrm82/bcbio_single_cell_workflow
mistrm82/bwib-meetup
material we talk in our meet-ups
mistrm82/CUT-RUNTools-2.0
mistrm82/datacarpentry
Data Carpentry workshop materials
mistrm82/dib-training
Web site for Data Intensive Training at UC Davis
mistrm82/ginty_neuron
rna-seq of seven neuron types
mistrm82/GitHub_workshop_demo
Workshop to demonstrate linking Dataverse to GitHub
mistrm82/gitkraken_workshop
Hands on class with GUI GitKraken
mistrm82/harwell_chipseq
mistrm82/harwell_prdm16
mistrm82/hbc.github.io
Jekyll based website for the Harvard Chan Bioinformatics Core
mistrm82/Intro-to-R-extended
Intro to R materials for six hour workshop
mistrm82/knowledgebase
General knowledge for HBC computing
mistrm82/learning_github
Hands on class with GUI GitKraken
mistrm82/NGS_Reproducibility
mistrm82/py_sam_2_spikenormbg
takes a folder of data sam files and associated spike sam files to generate spike normailized bedgraphs/bigwigs with optional size selection
mistrm82/rossi_mouseTGF
mistrm82/rubin-array
mouse Gene ST arrays
mistrm82/Scripts
Scripts and pipelines
mistrm82/sharpe_tumour
mistrm82/sharpePD1_rnaseq