A collection of 7 ECG heartbeat detection algorithms implemented in Python. Developed in conjunction with a new ECG database: http://researchdata.gla.ac.uk/716/. This repository also contains a testing class for the MITDB and the new University of Glasgow database.
Before the detectors can be used the class must first be initalised with the sampling rate of the ECG recording. A full usage example of how to use the detectors and plot the output can be found in usage_example.py.
from ecgdetectors import Detectors
detectors = Detectors(fs)Hamilton
Implementation of P.S. Hamilton, “Open Source ECG Analysis Software Documentation”, E.P.Limited, 2002.
Usage:
r_peaks = detectors.hamilton_detector(unfiltered_ecg)Christov
Implementation of Ivaylo I. Christov, “Real time electrocardiogram QRS detection using combined adaptive threshold”, BioMedical Engineering OnLine 2004, vol. 3:28, 2004.
Usage:
r_peaks = detectors.christov_detector(unfiltered_ecg)Engelse and Zeelenberg
Implementation of W. Engelse and C. Zeelenberg, “A single scan algorithm for QRS detection and feature extraction”, IEEE Comp. in Cardiology, vol. 6, pp. 37-42, 1979 with modifications A. Lourenco, H. Silva, P. Leite, R. Lourenco and A. Fred, “Real Time Electrocardiogram Segmentation for Finger Based ECG Biometrics”, BIOSIGNALS 2012, pp. 49-54, 2012.
Usage:
r_peaks = detectors.engzee_detector(unfiltered_ecg)Pan and Tompkins
Implementation of Jiapu Pan and Willis J. Tompkins. “A Real-Time QRS Detection Algorithm”. In: IEEE Transactions on Biomedical Engineering BME-32.3 (1985), pp. 230–236.
Usage:
r_peaks = detectors.pan_tompkins_detector(unfiltered_ecg)Stationary Wavelet Transform
Implementation based on Vignesh Kalidas and Lakshman Tamil. “Real-time QRS detector using Stationary Wavelet Transform for Automated ECG Analysis”. In: 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE). Uses the Pan and Tompkins thresolding method.
Usage:
r_peaks = detectors.swt_detector(unfiltered_ecg)Two Moving Average
Implementation of Elgendi, Mohamed & Jonkman, Mirjam & De Boer, Friso. (2010). "Frequency Bands Effects on QRS Detection" The 3rd International Conference on Bio-inspired Systems and Signal Processing (BIOSIGNALS2010). 428-431.
Usage:
r_peaks = detectors.two_average_detector(unfiltered_ecg)Matched Filter
FIR matched filter using template of QRS complex. Template provided for 250Hz and 360Hz. Uses the Pan and Tompkins thresolding method.
Usage:
r_peaks = detectors.matched_filter_detector(unfiltered_ecg)