2013.3.14 INSTALL ========================= #. need the GWASModules (particular, the pymodule/ folder) #. the repositories have to be in ~/script/ path. like ~/script/pymodule/..., ~/script/vervet/src/... so that python modules could be found without any PYTHONPATH setup. 2013.3.14 To establish the main database (vervet/src/db/VervetDB.py, pymodule/db/Genome.py, etc.) ================================================================================================= Establish three schemas (+ triggers for users/dates) and pre-fill some tables with contents #. genome schema (tax_id=0, for simulated species) #. chromosome_type #. genome_annotation_type #. taxonomy schema #. public schema #. sequencer, sequence_type, ind2ind #. relationship_type, alignment_method, #. study, locus_type