Pinned Repositories
bmi203_final
final project for bmi203
BMI203_HW1
homework 1 for algorithms
BMI203_HW3
Smith-Waterman algorithm
BMI206
Individual Analysis
bondy-denony-lab
Bootstrap_averager
Takes Newick format trees and computes average bootstrap of entire tree
DefenseHotspot
anti-phage defense hotspots
example
example python project with continuous integration testing
phamlite
mjoh223's Repositories
mjoh223/phamlite
mjoh223/bmi203_final
final project for bmi203
mjoh223/BMI203_HW1
homework 1 for algorithms
mjoh223/BMI203_HW3
Smith-Waterman algorithm
mjoh223/BMI206
Individual Analysis
mjoh223/bondy-denony-lab
mjoh223/Bootstrap_averager
Takes Newick format trees and computes average bootstrap of entire tree
mjoh223/DefenseHotspot
anti-phage defense hotspots
mjoh223/example
example python project with continuous integration testing
mjoh223/FastaRand
Randomizes FASTA sequences
mjoh223/flipGenbank
flips genbank
mjoh223/Gray-Matter
Neural network that searches for remote gene families using word embeddings
mjoh223/HW2
BMI203 HW2
mjoh223/NasChase
Finds occurrences of Nasonia chases from trajectory data - to be incorporated into NasTracks
mjoh223/NasTracks
ShinyApp that analyzes idTracker data for Nasonia wasps and produces graphs
mjoh223/nastracks-demo-data
sample trajectory data
mjoh223/Protein-cutter
Cuts out conserved motifs from protein families for use in building phylogenetic motif trees
mjoh223/SAMS
Large regular expression that scores and detects SIM/SMR genes
mjoh223/SpacerMakerCas13b
Ranks spacers based on PFS rules and RNAplfold RNA accessibility described in Smargon et al. Cell 2017.
mjoh223/synet
anti-CRISPR "guilt by association network
mjoh223/synet_app
Dash app for synet