Pinned Repositories
ShigEiFinder
Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
MGT_reads2alleles
Pipeline for converting raw reads into alleles for submission to the MGT website
meta2itol
tabular metadata files converted to colour strip inputs for iTOL
Aus_Abortusovis
Scripts used for the analysis of an Australian clade of Salmonella Abortusovis
bioconda-recipes
Conda recipes for the bioconda channel.
MGT-Seventh-Pandemic
mlst
:id: Scan contig files against PubMLST typing schemes
srst2
Short Read Sequence Typing for Bacterial Pathogens
bioconda-recipes
Conda recipes for the bioconda channel.
salty
The Staphylococcus aureus Lineage Typer (SaLTy)
mjohnpayne's Repositories
mjohnpayne/bioconda-recipes
Conda recipes for the bioconda channel.
mjohnpayne/Aus_Abortusovis
Scripts used for the analysis of an Australian clade of Salmonella Abortusovis
mjohnpayne/meta2itol
tabular metadata files converted to colour strip inputs for iTOL
mjohnpayne/mlst
:id: Scan contig files against PubMLST typing schemes
mjohnpayne/MGT-Seventh-Pandemic
mjohnpayne/srst2
Short Read Sequence Typing for Bacterial Pathogens